dpkg-checkbuilddeps: error: Unmet build dependencies: r-base-dev (>= 3.6.1) W: Unmet build-dependency in source dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building nlme using existing ./nlme_3.1.140.orig.tar.gz dpkg-source: info: building nlme in nlme_3.1.140-1~bustercran.0.debian.tar.xz dpkg-source: info: building nlme in nlme_3.1.140-1~bustercran.0.dsc I: Generating source changes file for original dsc dpkg-genchanges: warning: the current version (3.1.140-1~bustercran.0) is earlier than the previous one (3.1.140-1) dpkg-genchanges: info: including full source code in upload W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 9 08:12:15 CEST 2019 I: pbuilder-time-stamp: 1562652735 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-i386-base.tgz] I: copying local configuration I: Installing apt-lines I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Copying source file I: copying [../nlme_3.1.140-1~bustercran.0.dsc] I: copying [../nlme_3.1.140.orig.tar.gz] I: copying [../nlme_3.1.140-1~bustercran.0.debian.tar.xz] I: Extracting source dpkg-source: warning: extracting unsigned source package (nlme_3.1.140-1~bustercran.0.dsc) dpkg-source: info: extracting nlme in nlme-3.1.140 dpkg-source: info: unpacking nlme_3.1.140.orig.tar.gz dpkg-source: info: unpacking nlme_3.1.140-1~bustercran.0.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 7.0.0), r-base-dev (>= 3.6.1), dh-r, r-cran-lattice (>= 0.12-11.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12159 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev (>= 3.6.1); however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lattice (>= 0.12-11.1); however: Package r-cran-lattice is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-8-0{a} libpcre2-dev{a} libpcre2-posix0{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 30.6 MB/90.4 MB of archives. After unpacking 261 MB will be used. Writing extended state information... Get: 1 http://localhost/r-cran buster-cran35/ r-base-core 3.6.1-2~bustercran.0 [24.7 MB] Get: 2 http://ftp.de.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 3 http://localhost/r-cran buster-cran35/ r-base-dev 3.6.1-2~bustercran.0 [4480 B] Get: 4 http://ftp.de.debian.org/debian buster/main i386 openssl i386 1.1.1c-1 [851 kB] Get: 5 http://ftp.de.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 6 http://ftp.de.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 7 http://ftp.de.debian.org/debian buster/main i386 unzip i386 6.0-23 [169 kB] Get: 8 http://ftp.de.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB] Get: 9 http://ftp.de.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB] Get: 10 http://ftp.de.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2 [103 kB] Get: 11 http://ftp.de.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 12 http://ftp.de.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 13 http://ftp.de.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 14 http://ftp.de.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 15 http://ftp.de.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 16 http://ftp.de.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4 [358 kB] Get: 17 http://ftp.de.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 18 http://ftp.de.debian.org/debian buster/main i386 libpng-dev i386 1.6.36-6 [310 kB] Get: 19 http://ftp.de.debian.org/debian buster/main i386 libbz2-dev i386 1.0.6-9.1 [31.1 kB] Fetched 30.6 MB in 4s (7896 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12159 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../006-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../009-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../013-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../019-libssl1.1_1.1.1c-1_i386.deb ... Unpacking libssl1.1:i386 (1.1.1c-1) ... Selecting previously unselected package openssl. Preparing to unpack .../020-openssl_1.1.1c-1_i386.deb ... Unpacking openssl (1.1.1c-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../021-ca-certificates_20190110_all.deb ... 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Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../028-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../030-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../031-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../032-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../033-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../034-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../035-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../036-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../037-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../038-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package zip. Preparing to unpack .../039-zip_3.0-11+b1_i386.deb ... Unpacking zip (3.0-11+b1) ... Selecting previously unselected package unzip. 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Unpacking libpixman-1-0:i386 (0.36.0-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../053-libxau6_1%3a1.0.8-1+b2_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../055-libxcb1_1.13.1-2_i386.deb ... Unpacking libxcb1:i386 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../057-libx11-6_2%3a1.6.7-1_i386.deb ... Unpacking libx11-6:i386 (2:1.6.7-1) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../058-libxcb-render0_1.13.1-2_i386.deb ... Unpacking libxcb-render0:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../059-libxcb-shm0_1.13.1-2_i386.deb ... Unpacking libxcb-shm0:i386 (1.13.1-2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../060-libxext6_2%3a1.3.3-1+b2_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../061-libxrender1_1%3a0.9.10-1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../062-libcairo2_1.16.0-4_i386.deb ... Unpacking libcairo2:i386 (1.16.0-4) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../063-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../064-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../065-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../066-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../067-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../068-libsasl2-modules-db_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../069-libsasl2-2_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../070-libldap-common_2.4.47+dfsg-3_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../071-libldap-2.4-2_2.4.47+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../072-libnghttp2-14_1.36.0-2_i386.deb ... Unpacking libnghttp2-14:i386 (1.36.0-2) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../073-libpsl5_0.20.2-2_i386.deb ... Unpacking libpsl5:i386 (0.20.2-2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../074-librtmp1_2.4+20151223.gitfa8646d.1-2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../075-libssh2-1_1.8.0-2.1_i386.deb ... Unpacking libssh2-1:i386 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:i386. 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Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../130-pkg-config_0.29-6_i386.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../131-r-base-dev_3.6.1-2~bustercran.0_all.deb ... Unpacking r-base-dev (3.6.1-2~bustercran.0) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../132-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../133-libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../134-dh-r_20190121_all.deb ... Unpacking dh-r (20190121) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../135-r-cran-lattice_0.20-38-1_i386.deb ... Unpacking r-cran-lattice (0.20-38-1) ... Setting up libexpat1:i386 (2.2.6-2) ... Setting up libpcrecpp0v5:i386 (2:8.39-12) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libgraphite2-3:i386 (1.3.13-7) ... Setting up libpixman-1-0:i386 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:i386 (1:1.0.8-1+b2) ... Setting up libkeyutils1:i386 (1.6-6) ... Setting up libpsl5:i386 (0.20.2-2) ... Setting up libpcre16-3:i386 (2:8.39-12) ... Setting up libdatrie1:i386 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libssl1.1:i386 (1.1.1c-1) ... Setting up unzip (6.0-23) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel [....] Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix[?25l7[ ok 8[?12l[?25h. Setting up libnghttp2-14:i386 (1.36.0-2) ... Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libldap-common (2.4.47+dfsg-3) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libpcre2-16-0:i386 (10.32-5) ... Setting up libicu63:i386 (63.1-6) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:i386 (10.32-5) ... Setting up libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Setting up libswitch-perl (2.17-2) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libjpeg62-turbo-dev:i386 (1:1.5.2-2+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libfribidi0:i386 (1.0.5-3.1) ... Setting up libpng16-16:i386 (1.6.36-6) ... Setting up libpcre32-3:i386 (2:8.39-12) ... Setting up libtcl8.6:i386 (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up icu-devtools (63.1-6) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcre2-8-0:i386 (10.32-5) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-1) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up liblzma-dev:i386 (5.2.4-1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:i386 (1.8.0-2.1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libtiff5:i386 (4.0.10-4) ... Setting up openssl (1.1.1c-1) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:i386 (63.1-6) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libbz2-dev:i386 (1.0.6-9.1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:i386 (8.3.0-6) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libncurses-dev:i386 (6.1+20181013-2) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libpcre3-dev:i386 (2:8.39-12) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libpng-dev:i386 (1.6.36-6) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libreadline-dev:i386 (7.0-5) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libthai0:i386 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpcre2-posix0:i386 (10.32-5) ... Setting up libfreetype6:i386 (2.9.1-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:i386 (6.1+20181013-2) ... Setting up libcurl4:i386 (7.64.0-4) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.2-2+b3) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28) ... Creating config file /etc/papersize with new version Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libpcre2-dev:i386 (10.32-5) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Building database of manual pages ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libxt6:i386 (1:1.1.5-1+b3) ... Setting up xauth (1:1.0.10-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.2-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:i386 (8.6.9-2) ... Setting up libpango-1.0-0:i386 (1.42.4-6) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-6) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up r-base-core (3.6.1-2~bustercran.0) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-38-1) ... Setting up r-base-dev (3.6.1-2~bustercran.0) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up dh-r (20190121) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/134 kB of archives. After this operation, 369 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17858 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.23-1_i386.deb ... Unpacking libfakeroot:i386 (1.23-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.23-1_i386.deb ... Unpacking fakeroot (1.23-1) ... Setting up libfakeroot:i386 (1.23-1) ... Setting up fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for man-db (2.8.5-2) ... Processing triggers for libc-bin (2.28-10) ... I: Copying back the cached apt archive contents I: new cache content 'libpaper1_1.1.28_i386.deb' added I: new cache content 'libpaper-utils_1.1.28_i386.deb' added I: new cache content 'openssl_1.1.1c-1_i386.deb' added I: new cache content 'libk5crypto3_1.17-3_i386.deb' added I: new cache content 'libgssapi-krb5-2_1.17-3_i386.deb' added I: new cache content 'r-base-core_3.6.1-2~bustercran.0_i386.deb' added I: new cache content 'libcurl4_7.64.0-4_i386.deb' added I: new cache content 'libelf1_0.176-1.1_i386.deb' added I: new cache content 'libexpat1_2.2.6-2_i386.deb' added I: new cache content 'libpng16-16_1.6.36-6_i386.deb' added I: new cache content 'unzip_6.0-23_i386.deb' added I: new cache content 'r-base-dev_3.6.1-2~bustercran.0_all.deb' added I: new cache content 'libglib2.0-0_2.58.3-2_i386.deb' added I: new cache content 'lsb-base_10.2019051400_all.deb' added I: new cache content 'libpng-dev_1.6.36-6_i386.deb' added I: new cache content 'libssl1.1_1.1.1c-1_i386.deb' added I: new cache content 'libkrb5support0_1.17-3_i386.deb' added I: new cache content 'libbz2-dev_1.0.6-9.1_i386.deb' added I: new cache content 'libkrb5-3_1.17-3_i386.deb' added I: Building the package I: Running cd /build/nlme-3.1.140/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -sa dpkg-buildpackage: info: source package nlme dpkg-buildpackage: info: source version 3.1.140-1~bustercran.0 dpkg-buildpackage: info: source distribution buster-cran dpkg-buildpackage: info: source changed by Johannes Ranke dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building nlme using existing ./nlme_3.1.140.orig.tar.gz dpkg-source: info: building nlme in nlme_3.1.140-1~bustercran.0.debian.tar.xz dpkg-source: info: building nlme in nlme_3.1.140-1~bustercran.0.dsc debian/rules build dh build --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R fakeroot debian/rules binary dh binary --buildsystem R dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: nlme Version: 3.1-140 I: R package with Priority: recommended, installing in usr/lib/R/library I: Building using R version 3.6.1-2~bustercran.0 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Tue, 09 Jul 2019 08:12:14 +0200 mkdir -p /build/nlme-3.1.140/debian/r-cran-nlme/usr/lib/R/library R CMD INSTALL -l /build/nlme-3.1.140/debian/r-cran-nlme/usr/lib/R/library --clean . "--built-timestamp='Tue, 09 Jul 2019 08:12:14 +0200'" * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/build/nlme-3.1.140/src' gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -c chol.f -o chol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c corStruct.c -o corStruct.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gnls.c -o gnls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nlOptimizer.c -o nlOptimizer.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nlme.c -o nlme.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nlmefit.c -o nlmefit.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pdMat.c -o pdMat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pythag.c -o pythag.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.6.1=. -fstack-protector-strong -c rs.f -o rs.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/nlme-3.1.140/src' make[1]: Entering directory '/build/nlme-3.1.140/src' make[1]: Leaving directory '/build/nlme-3.1.140/src' installing to /build/nlme-3.1.140/debian/r-cran-nlme/usr/lib/R/library/00LOCK-nlme-3.1.140/00new/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlme) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-hmisc for Suggests:Hmisc I: Using r-cran-mass for Suggests:MASS I: Using r-cran-lattice for Imports:lattice Create lintian-override for package-contains-documentation-outside-usr-share-doc due to debian/r-cran-nlme/usr/lib/R/library/nlme/mlbook/README dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/pl/LC_MESSAGES/nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/ko/LC_MESSAGES/nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/ko/LC_MESSAGES/R-nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/fr/LC_MESSAGES/nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/de/LC_MESSAGES/R-nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/pl/LC_MESSAGES/R-nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/fr/LC_MESSAGES/R-nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/de/LC_MESSAGES/nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/en@quot/LC_MESSAGES/nlme.mo Normalized debian/r-cran-nlme/usr/lib/R/library/nlme/po/en@quot/LC_MESSAGES/R-nlme.mo dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-nlme/usr/lib/R/library/nlme/libs/nlme.so was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-nlme/usr/lib/R/library/nlme/libs/nlme.so was not linked against libquadmath.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: package r-cran-nlme: substitution variable ${R:Suggests} unused, but is defined dpkg-gencontrol: warning: package r-cran-nlme: substitution variable ${R:Suggests} unused, but is defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-nlme' in '../r-cran-nlme_3.1.140-1~bustercran.0_i386.deb'. dpkg-deb: building package 'r-cran-nlme-dbgsym' in '../r-cran-nlme-dbgsym_3.1.140-1~bustercran.0_i386.deb'. dpkg-genbuildinfo dpkg-genchanges -sa >../nlme_3.1.140-1~bustercran.0_i386.changes dpkg-genchanges: warning: the current version (3.1.140-1~bustercran.0) is earlier than the previous one (3.1.140-1) dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload (original source is included) I: copying local configuration I: Copying back the cached apt archive contents I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env  I: removing directory /var/cache/pbuilder/buster-i386/build/402 and its subdirectories I: Current time: Tue Jul 9 08:13:51 CEST 2019 I: pbuilder-time-stamp: 1562652831