Last updated on 2025-10-21 09:48:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.01 | 253.50 | 266.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 9.62 | 275.24 | 284.86 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 318.39 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 352.87 | OK | |||
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.32 | 269.79 | 285.11 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.69 | 272.97 | 288.66 | OK | |
| r-release-macos-arm64 | 1.1.4 | 102.00 | OK | |||
| r-release-macos-x86_64 | 1.1.4 | 225.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 189.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | 98.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.4 | 208.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 25.00 | 239.00 | 264.00 | OK |
Version: 1.1.4
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mapi.html:317:1 (mapi.Rd:174): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/157s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.539, system: 0.055, elapsed: 2.686 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.029, system: 0.104, elapsed: 15.808 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.017, elapsed: 0.315 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.843, system: 0.227, elapsed: 5.625 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.287 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.305, system: 0.431, elapsed: 25.644 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.568, system: 0.060, elapsed: 2.930 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.132, system: 0.233, elapsed: 17.414 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.019, elapsed: 0.287 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.919, system: 0.257, elapsed: 8.026 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.009, elapsed: 0.328 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.535, system: 0.608, elapsed: 30.054 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.064, elapsed: 3.407 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.107, system: 0.200, elapsed: 19.820 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.015, elapsed: 0.365 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.888, system: 0.271, elapsed: 8.072 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.009, elapsed: 0.306 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.180, system: 0.237, elapsed: 1.502 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.792, system: 0.830, elapsed: 34.806 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.529, system: 0.044, elapsed: 2.992 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.008, system: 0.145, elapsed: 19.098 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.013, elapsed: 0.420 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.007, system: 0.340, elapsed: 7.624 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.013, elapsed: 0.311 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.649, system: 0.854, elapsed: 24.752 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.198, system: 1.442, elapsed: 56.575 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.690, system: 0.080, elapsed: 2.497 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.069, system: 0.233, elapsed: 14.000 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.019, elapsed: 0.515 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.696, system: 0.239, elapsed: 9.441 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.009, elapsed: 0.425 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.356, system: 0.609, elapsed: 28.030 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.595, system: 0.052, elapsed: 3.629 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.155, system: 0.219, elapsed: 18.862 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.020, elapsed: 0.434 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.717, system: 0.248, elapsed: 5.707 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.012, elapsed: 0.257 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.377, system: 0.596, elapsed: 30.065 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.785, system: 0.100, elapsed: 2.526 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.244, system: 0.325, elapsed: 16.874 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.014, elapsed: 0.587 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.641, system: 0.200, elapsed: 8.838 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.010, elapsed: 0.416 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.110, system: 0.279, elapsed: 1.456 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.765, system: 0.973, elapsed: 32.024 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.049, elapsed: 3.276 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.951, system: 0.084, elapsed: 15.945 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.013, elapsed: 0.328 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.616, system: 0.182, elapsed: 5.790 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.279 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.145, system: 0.485, elapsed: 15.969 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.315, system: 0.845, elapsed: 42.656 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64