CRAN Package Check Results for Package hmde

Last updated on 2025-09-17 09:50:20 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.2.1	688.87	436.54	1125.41	ERROR
r-devel-linux-x86_64-debian-gcc	1.2.1	597.00	407.08	1004.08	ERROR
r-devel-linux-x86_64-fedora-clang	1.2.1			1864.33	ERROR
r-devel-linux-x86_64-fedora-gcc	1.2.1			1156.11	ERROR
r-devel-windows-x86_64	1.2.1	708.00	522.00	1230.00	OK
r-patched-linux-x86_64	1.2.1	835.68	468.07	1303.75	OK
r-release-linux-x86_64	1.2.1	824.14	502.78	1326.92	ERROR
r-release-macos-arm64	1.2.1			277.00	OK
r-release-macos-x86_64	1.2.1			385.00	OK
r-release-windows-x86_64	1.2.1	771.00	524.00	1295.00	ERROR
r-oldrel-macos-arm64	1.2.1			299.00	NOTE
r-oldrel-macos-x86_64	1.2.1			383.00	NOTE
r-oldrel-windows-x86_64	1.2.1	867.00	698.00	1565.00	ERROR

Check Details

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ [22s/26s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.001399 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 13.99 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.242 seconds (Warm-up) Chain 1: 0.261 seconds (Sampling) Chain 1: 0.503 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.001163 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 11.63 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 3.93 seconds (Warm-up) Chain 2: 2.157 seconds (Sampling) Chain 2: 6.087 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1.6e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.419 seconds (Warm-up) Chain 1: 0.755 seconds (Sampling) Chain 1: 1.174 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 2.7e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.001 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0.001 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.3e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.002 seconds (Warm-up) Chain 2: 0.001 seconds (Sampling) Chain 2: 0.003 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.7e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.894 seconds (Warm-up) Chain 1: 0.962 seconds (Sampling) Chain 1: 1.856 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000162 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.62 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.022 seconds (Warm-up) Chain 1: 0.022 seconds (Sampling) Chain 1: 0.044 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.9e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.006 seconds (Warm-up) Chain 2: 0.02 seconds (Sampling) Chain 2: 0.026 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.61 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.054 seconds (Warm-up) Chain 1: 0.043 seconds (Sampling) Chain 1: 0.097 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.9e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.056 seconds (Warm-up) Chain 1: 0.073 seconds (Sampling) Chain 1: 0.129 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ [14s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 2.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.004953 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 49.53 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.319 seconds (Warm-up) Chain 1: 0.07 seconds (Sampling) Chain 1: 0.389 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000875 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 8.75 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.771 seconds (Warm-up) Chain 2: 1.147 seconds (Sampling) Chain 2: 1.918 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.227 seconds (Warm-up) Chain 1: 0.53 seconds (Sampling) Chain 1: 0.757 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 2.5e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.001 seconds (Warm-up) Chain 1: 0.001 seconds (Sampling) Chain 1: 0.002 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.002 seconds (Warm-up) Chain 2: 0 seconds (Sampling) Chain 2: 0.002 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.748 seconds (Warm-up) Chain 1: 0.948 seconds (Sampling) Chain 1: 1.696 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.7e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.005 seconds (Warm-up) Chain 1: 0.037 seconds (Sampling) Chain 1: 0.042 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.9e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.002 seconds (Warm-up) Chain 2: 0.045 seconds (Sampling) Chain 2: 0.047 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.073 seconds (Warm-up) Chain 1: 0.063 seconds (Sampling) Chain 1: 0.136 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.035 seconds (Warm-up) Chain 1: 0.091 seconds (Sampling) Chain 1: 0.126 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ [29s/57s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.51 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.002169 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 21.69 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.379 seconds (Warm-up) Chain 1: 0.157 seconds (Sampling) Chain 1: 0.536 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.005116 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 51.16 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 4.282 seconds (Warm-up) Chain 2: 0.134 seconds (Sampling) Chain 2: 4.416 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.5e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.171 seconds (Warm-up) Chain 1: 2.782 seconds (Sampling) Chain 1: 3.953 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.007 seconds (Warm-up) Chain 1: 0.002 seconds (Sampling) Chain 1: 0.009 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 3.4e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.007 seconds (Warm-up) Chain 2: 0.033 seconds (Sampling) Chain 2: 0.04 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.5e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.703 seconds (Warm-up) Chain 1: 4.733 seconds (Sampling) Chain 1: 6.436 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 8.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.88 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.025 seconds (Warm-up) Chain 1: 0.03 seconds (Sampling) Chain 1: 0.055 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 6.3e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.63 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.016 seconds (Warm-up) Chain 2: 0.273 seconds (Sampling) Chain 2: 0.289 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000101 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.01 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.306 seconds (Warm-up) Chain 1: 0.416 seconds (Sampling) Chain 1: 0.722 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 6.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.68 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.07 seconds (Warm-up) Chain 1: 0.55 seconds (Sampling) Chain 1: 0.62 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.1
Check: whether package can be installed
Result: ERROR Installation failed. Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ [21s/25s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1.2e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.001522 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 15.22 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.579 seconds (Warm-up) Chain 1: 1.63 seconds (Sampling) Chain 1: 3.209 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.00132 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 13.2 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.047 seconds (Warm-up) Chain 2: 2.255 seconds (Sampling) Chain 2: 2.302 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.27 seconds (Warm-up) Chain 1: 0.255 seconds (Sampling) Chain 1: 0.525 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1.7e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.001 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0.001 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.2e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.001 seconds (Warm-up) Chain 2: 0.002 seconds (Sampling) Chain 2: 0.003 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 2.6e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.112 seconds (Warm-up) Chain 1: 1.251 seconds (Sampling) Chain 1: 2.363 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 7.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.71 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.029 seconds (Warm-up) Chain 1: 0.014 seconds (Sampling) Chain 1: 0.043 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.7e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.001 seconds (Warm-up) Chain 2: 0.027 seconds (Sampling) Chain 2: 0.028 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.44 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.022 seconds (Warm-up) Chain 1: 0.098 seconds (Sampling) Chain 1: 0.12 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.4 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.082 seconds (Warm-up) Chain 1: 0.102 seconds (Sampling) Chain 1: 0.184 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 1.2.1
Check: tests
Result: ERROR Running 'testthat.R' [22s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000191 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.91 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.002389 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 23.89 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.089 seconds (Warm-up) Chain 1: 0.047 seconds (Sampling) Chain 1: 1.136 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.002424 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 24.24 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 3.808 seconds (Warm-up) Chain 2: 1.697 seconds (Sampling) Chain 2: 5.505 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 9e-06 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.402 seconds (Warm-up) Chain 1: 0.897 seconds (Sampling) Chain 1: 1.299 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.2e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.42 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.004 seconds (Warm-up) Chain 1: 0.007 seconds (Sampling) Chain 1: 0.011 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 9e-06 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.003 seconds (Warm-up) Chain 2: 0.002 seconds (Sampling) Chain 2: 0.005 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.4 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.334 seconds (Warm-up) Chain 1: 1.821 seconds (Sampling) Chain 1: 3.155 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 7.4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.74 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.01 seconds (Warm-up) Chain 1: 0.008 seconds (Sampling) Chain 1: 0.018 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.8e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.003 seconds (Warm-up) Chain 2: 0.01 seconds (Sampling) Chain 2: 0.013 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.2e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.045 seconds (Warm-up) Chain 1: 0.152 seconds (Sampling) Chain 1: 0.197 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 5.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.53 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.097 seconds (Warm-up) Chain 1: 0.059 seconds (Sampling) Chain 1: 0.156 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 1.2.1
Check: installed package size
Result: NOTE installed size is 113.0Mb sub-directories of 1Mb or more: article 3.0Mb doc 1.1Mb libs 108.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.2.1
Check: tests
Result: ERROR Running 'testthat.R' [39s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(hmde) > > test_check("hmde") SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 9e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.9 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.01 seconds (Warm-up) Chain 1: 0 seconds (Sampling) Chain 1: 0.01 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.006324 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 63.24 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 3.339 seconds (Warm-up) Chain 1: 6.448 seconds (Sampling) Chain 1: 9.787 seconds (Total) Chain 1: SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.004251 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 42.51 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 4.109 seconds (Warm-up) Chain 2: 0.721 seconds (Sampling) Chain 2: 4.83 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 1.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.641 seconds (Warm-up) Chain 1: 1.029 seconds (Sampling) Chain 1: 1.67 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.009 seconds (Warm-up) Chain 1: 0.016 seconds (Sampling) Chain 1: 0.025 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.3e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.006 seconds (Warm-up) Chain 2: 0.001 seconds (Sampling) Chain 2: 0.007 seconds (Total) Chain 2: SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.8e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup) Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup) Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup) Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup) Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup) Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling) Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling) Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling) Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling) Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling) Chain 1: Iteration: 1000 / 1000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 1.443 seconds (Warm-up) Chain 1: 2.109 seconds (Sampling) Chain 1: 3.552 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000398 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.98 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 20 [ 5%] (Warmup) Chain 1: Iteration: 2 / 20 [ 10%] (Warmup) Chain 1: Iteration: 4 / 20 [ 20%] (Warmup) Chain 1: Iteration: 6 / 20 [ 30%] (Warmup) Chain 1: Iteration: 8 / 20 [ 40%] (Warmup) Chain 1: Iteration: 10 / 20 [ 50%] (Warmup) Chain 1: Iteration: 11 / 20 [ 55%] (Sampling) Chain 1: Iteration: 12 / 20 [ 60%] (Sampling) Chain 1: Iteration: 14 / 20 [ 70%] (Sampling) Chain 1: Iteration: 16 / 20 [ 80%] (Sampling) Chain 1: Iteration: 18 / 20 [ 90%] (Sampling) Chain 1: Iteration: 20 / 20 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.009 seconds (Warm-up) Chain 1: 0.192 seconds (Sampling) Chain 1: 0.201 seconds (Total) Chain 1: SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 9.5e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.95 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 20 [ 5%] (Warmup) Chain 2: Iteration: 2 / 20 [ 10%] (Warmup) Chain 2: Iteration: 4 / 20 [ 20%] (Warmup) Chain 2: Iteration: 6 / 20 [ 30%] (Warmup) Chain 2: Iteration: 8 / 20 [ 40%] (Warmup) Chain 2: Iteration: 10 / 20 [ 50%] (Warmup) Chain 2: Iteration: 11 / 20 [ 55%] (Sampling) Chain 2: Iteration: 12 / 20 [ 60%] (Sampling) Chain 2: Iteration: 14 / 20 [ 70%] (Sampling) Chain 2: Iteration: 16 / 20 [ 80%] (Sampling) Chain 2: Iteration: 18 / 20 [ 90%] (Sampling) Chain 2: Iteration: 20 / 20 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.008 seconds (Warm-up) Chain 2: 0.005 seconds (Sampling) Chain 2: 0.013 seconds (Total) Chain 2: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 7.6e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.76 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.135 seconds (Warm-up) Chain 1: 0.086 seconds (Sampling) Chain 1: 0.221 seconds (Total) Chain 1: SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 9.1e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.91 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 3 Chain 1: adapt_window = 20 Chain 1: term_buffer = 2 Chain 1: Chain 1: Iteration: 1 / 50 [ 2%] (Warmup) Chain 1: Iteration: 5 / 50 [ 10%] (Warmup) Chain 1: Iteration: 10 / 50 [ 20%] (Warmup) Chain 1: Iteration: 15 / 50 [ 30%] (Warmup) Chain 1: Iteration: 20 / 50 [ 40%] (Warmup) Chain 1: Iteration: 25 / 50 [ 50%] (Warmup) Chain 1: Iteration: 26 / 50 [ 52%] (Sampling) Chain 1: Iteration: 30 / 50 [ 60%] (Sampling) Chain 1: Iteration: 35 / 50 [ 70%] (Sampling) Chain 1: Iteration: 40 / 50 [ 80%] (Sampling) Chain 1: Iteration: 45 / 50 [ 90%] (Sampling) Chain 1: Iteration: 50 / 50 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.132 seconds (Warm-up) Chain 1: 0.088 seconds (Sampling) Chain 1: 0.22 seconds (Total) Chain 1: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ── `plot` does not have names. ── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ── `plot` has type 'object', not 'list'. ── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ── `plot` does not have names. ── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ── `plot` has type 'object', not 'list'. [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64