Historical and Ahistorical Population Projection Matrix Analysis

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Documentation for package ‘lefko3’ version 6.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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lefko3-package	Historical and Ahistorical Population Projection Matrix Analysis
actualstage3	Calculate Actual Stage, Age, Stage-Pair, or Age-Stage Distributions
add_lM	Add Matrices to lefkoMat Object
add_stage	Add a New Stage to an Existing LefkoMat Object
aflefko2	Create Function-based Ahistorical Age x Stage Matrix Projection Model
anthyllis	Matrix Set of _Anthyllis vulneraria_ Populations in Belgium
append_lP	Append Projections Into New lefkoProj Object
arlefko2	Create Raw Ahistorical Age x Stage Matrix Projection Model
beverton3	Two-Parameter Beverton-Holt Function
cond_diff	Extract Conditional Ahistorical Difference Matrices
cond_hmpm	Extract Conditional Ahistorical Matrices from Historical MPM
create_lM	Create lefkoMat Object from Given Input Matrices or an MPM Database
create_pm	Creates a Skeleton Paramnames Object for Use in Function-based Modeling
cycle_check	Check Continuity of Life Cycle through Matrices in lefkoMat Objects
cypdata	Demographic Dataset of _Cypripedium candidum_ Population, in Horizontal Format
cypvert	Demographic Dataset of _Cypripedium candidum_ Population, in Vertical Format
delete_lM	Delete Matrices from lefkoMat Object
density_input	Set Density Dependence Relationships in Matrix Elements
density_vr	Set Density Dependence Relationships in Vital Rates
diff_lM	Calculate Difference Matrices Between lefkoMat Objects of Equal Dimensions
edit_lM	Edit an MPM based on Supplemental Data
elasticity3	Estimate Elasticity of Population Growth Rate to Matrix Elements
elasticity3.dgCMatrix	Estimate Elasticity of Population Growth Rate of a Single Sparse Matrix
elasticity3.lefkoMat	Estimate Elasticity of Population Growth Rate of a lefkoMat Object
elasticity3.list	Estimate Elasticity of Population Growth Rate of a List of Matrices
elasticity3.matrix	Estimate Elasticity of Population Growth Rate of a Single Matrix
flefko2	Create Function-based Ahistorical Matrix Projection Model
flefko3	Create Function-based Historical Matrix Projection Model
fleslie	Create Function-based Age-based (Leslie) Matrix Projection Model
f_projection3	Project Function-based Matrix Projection Model
hfv_qc	Assess Quality of hfv Datasets
historicalize3	Create Historical Vertical Data Frame from Ahistorical Vertical Data Frame
hist_null	Create Historical MPMs Assuming No Influence of Individual History
image3	Create Matrix Image
image3.dgCMatrix	Create a Matrix Image for a Single Sparse Matrix
image3.lefkoElas	Create Matrix Image(s) for lefkoElas Object
image3.lefkoMat	Create Matrix Image(s) for lefkoMat Object
image3.lefkoSens	Create Matrix Image(s) for lefkoSens Object
image3.list	Create Matrix Images for Matrices in a List
image3.matrix	Create a Matrix Image for a Single Matrix
lambda3	Estimate Actual or Deterministic Population Growth Rate
lathyrus	Demographic Dataset of _Lathyrus vernus_ Population
lefko3	Historical and Ahistorical Population Projection Matrix Analysis
lmean	Estimate Mean Projection Matrices
logistic3	Two-Parameter logistic Function
ltre3	Conduct a Life Table Response Experiment
markov_run	Creates Vector of Times Based on First-Order Markov Transition Matrix
matrix_interp	Arranges Matrix Elements in Order of Magnitude for Interpretation
miniMod	Minimize lefkoMod Object by Conversion to vrm_input Object
modelsearch	Develop Best-fit Vital Rate Estimation Models for MPM Development
mpm_create	General Matrix Projection Model Creation
overwrite	Create Overwrite Table for MPM Development
plot.lefkoProj	Plot Projection Simulations
projection3	Conduct Population Projection Simulations
pyrola	Demographic Dataset of _Pyrola japonica_ and _Pyrola subaphylla_ Populations, in Horizontal Format
repvalue3	Estimate Reproductive Value
repvalue3.dgCMatrix	Estimate Reproductive Value Vector for a Single Population Projection Matrix
repvalue3.lefkoMat	Estimate Reproductive Value Vectors of Matrices in a lefkoMat Object
repvalue3.list	Estimate Reproductive Value Vector for a List of Projection Matrices
repvalue3.matrix	Estimate Reproductive Value Vector for a Single Population Projection Matrix
ricker3	Two-Parameter Ricker Function
rlefko2	Create Raw Ahistorical Matrix Projection Model
rlefko3	Create Raw Historical Matrix Projection Model
rleslie	Create Raw Leslie (Age-based) Matrix Projection Model
sensitivity3	Estimate Sensitivity of Population Growth Rate to Matrix Elements
sensitivity3.dgCMatrix	Estimate Sensitivity of Population Growth Rate of a Single Matrix
sensitivity3.lefkoMat	Estimate Sensitivity of Population Growth Rate of a lefkoMat Object
sensitivity3.list	Estimate Sensitivity of Population Growth Rate of a List of Matrices
sensitivity3.matrix	Estimate Sensitivity of Population Growth Rate of a Single Matrix
sf_create	Create Stageframe for Population Matrix Projection Analysis
sf_distrib	Test Overdispersion and Zero Inflation in Size and Fecundity Distributions
sf_skeleton	Create Skeleton Stageframe
slambda3	Estimate Stochastic Population Growth Rate
stablestage3	Estimate Stable Stage Distribution
stablestage3.dgCMatrix	Estimate Stable Stage Distribution of a Single Population Projection Matrix
stablestage3.lefkoMat	Estimate Stable Stage Distribution of Matrices in lefkoMat Object
stablestage3.list	Estimate Stable Stage Distribution of a List of Projection Matrices
stablestage3.matrix	Estimate Stable Stage Distribution of a Single Population Projection Matrix
start_input	Create a Starting Vector for Population Projection
subset_lM	Create New lefkoMat Object as Subset of Another lefkoMat Object
summary.lefkoCondMat	Summary of Class "lefkoCondMat"
summary.lefkoElas	Summarize lefkoElas Objects
summary.lefkoLTRE	Summarize lefkoLTRE Objects
summary.lefkoMat	Summary of Class "lefkoMat"
summary.lefkoMod	Summary of Class "lefkoMod"
summary.lefkoProj	Summarize lefkoProj Objects
summary_hfv	Summary of Class "hfvdata"
supplemental	Create a Data Frame of Supplemental Data for MPM Development
usher3	Two-Parameter Usher Function
verticalize3	Create Historical Vertical Data Frame from Horizontal Data Frame
vrm_import	Import Vital Rate Model Factor Values for Function-based MPM Development