# Clustering and Visualizing Distance Matrices

## Documentation for package ‘Mercator’ version 1.1.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addVisualization | The 'Mercator' Distance Visualization Object
barplot-method | The 'Mercator' Distance Visualization Object
binaryDistance | Binary Distance Definitions Across Methods
BinaryMatrix | Class '"BinaryMatrix"'
BinaryMatrix-class | Class '"BinaryMatrix"'
CML1000 | CML Cytogenetic Data
CML500 | CML Cytogenetic Data
dim-method | The 'Mercator' Distance Visualization Object
dim-method | Class '"BinaryMatrix"'
downsample | Downsampling a Distance Visualization to Facilitate iGraph
fakeclin | CML Cytogenetic Data
fakedata | CML Cytogenetic Data
getClusters | The 'Mercator' Distance Visualization Object
goodmanKruskalDistance | Binary Distance Definitions Across Methods
goodmanKruskalSimilarity | Binary Distance Definitions Across Methods
hammingDistance | Binary Distance Definitions Across Methods
hist-method | The 'Mercator' Distance Visualization Object
hist-method | Class '"BinaryMatrix"'
jaccardDistance | Binary Distance Definitions Across Methods
jaccardSimilarity | Binary Distance Definitions Across Methods
lgfFeatures | CML Cytogenetic Data
Mercator | The 'Mercator' Distance Visualization Object
Mercator-class | The 'Mercator' Distance Visualization Object
mercator-data | CML Cytogenetic Data
pearsonDistance | Binary Distance Definitions Across Methods
pearsonSimilarity | Binary Distance Definitions Across Methods
plot-method | The 'Mercator' Distance Visualization Object
print-method | Class '"BinaryMatrix"'
recluster | Changing Cluster and Color Assignments in Mercator
recolor | Changing Cluster and Color Assignments in Mercator
remapColors | Changing Cluster and Color Assignments in Mercator
removeDuplicateFeatures | Remove Duplicate Features or Samples from a Binary Matrix Object
removeDuplicates | Remove Duplicate Features or Samples from a Binary Matrix Object
russellRaoSimilarity | Binary Distance Definitions Across Methods
russelRaoDistance | Binary Distance Definitions Across Methods
scatter-method | The 'Mercator' Distance Visualization Object
setClusters | Changing Cluster and Color Assignments in Mercator
show-method | Class '"BinaryMatrix"'
sokalMichenerDistance | Binary Distance Definitions Across Methods
sokalMichenerSimilarity | Binary Distance Definitions Across Methods
summary-method | The 'Mercator' Distance Visualization Object
summary-method | Class '"BinaryMatrix"'
t-method | Class '"BinaryMatrix"'
ThreshedBinaryMatrix | Threshing and Reaping the 'BinaryMatrix'
ThreshedBinaryMatrix-class | Threshing and Reaping the 'BinaryMatrix'
threshLGF | Threshing and Reaping the 'BinaryMatrix'
validBinaryMatrix | Class '"BinaryMatrix"'
[-method | The 'Mercator' Distance Visualization Object
[-method | Class '"BinaryMatrix"'