CSC                     Cause-specific Cox proportional hazard
                        regression
Cforest                 S3-wrapper function for cforest from the party
                        package
Ctree                   S3-Wrapper for ctree.
FGR                     Formula wrapper for crr from cmprsk
GLMnet                  Formula interface for glmnet
Hal9001                 Fitting HAL for use with predictRisk
IPA                     Explained variation for settings with binary,
                        survival and competing risk outcome
Melanoma                Malignant melanoma data
Paquid                  Paquid sample
Score                   Score risk predictions
SmcFcs                  SmcFcs
SuperPredictor          Formula interface for
                        SuperLearner::SuperLearner
SurvResponseVar         Extract the time and event variable from a Cox
                        model
anova.ate               Risk Comparison Over Time
as.data.table.ate       Turn ate Object Into a 'data.table'
as.data.table.influenceTest
                        Turn influenceTest Object Into a 'data.table'
as.data.table.predictCSC
                        Turn predictCSC Object Into a 'data.table'
as.data.table.predictCox
                        Turn predictCox Object Into a 'data.table'
ate                     Average Treatment Effects Computation
autoplot.Score          ggplot AUC curve
autoplot.ate            Plot Average Risks
autoplot.predictCSC     Plot Predictions From a Cause-specific Cox
                        Proportional Hazard Regression
autoplot.predictCox     Plot Predictions From a Cox Model
baseHaz_cpp             C++ Fast Baseline Hazard Estimation
boot2pvalue             Compute the p.value from the distribution under
                        H1
boxplot.Score           Boxplot risk quantiles
calcSeCSC               Standard error of the absolute risk predicted
                        from cause-specific Cox models
calcSeCox               Computation of standard errors for predictions
coef.CauseSpecificCox   Extract coefficients from a Cause-Specific Cox
                        regression model
coef.ate                Estimated Average Treatment Effect.
coef.riskRegression     Extract coefficients from riskRegression model
coef.wglm               Estimates from IPCW Logistic Regressions
colCenter_cpp           Apply - by column
colCumSum               Apply cumsum in each column
colMultiply_cpp         Apply * by column
colScale_cpp            Apply / by column
confint.ate             Confidence Intervals and Confidence Bands for
                        the average treatment effect.
confint.influenceTest   Confidence Intervals and Confidence Bands for
                        the Difference Between Two Estimates
confint.predictCSC      Confidence Intervals and Confidence Bands for
                        the Predicted Absolute Risk (Cumulative
                        Incidence Function)
confint.predictCox      Confidence Intervals and Confidence Bands for
                        the predicted Survival/Cumulative Hazard
confint.wglm            Confidence intervals for Estimate from IPCW
                        Logistic Regressions
coxBaseEstimator        Extract the type of estimator for the baseline
                        hazard
coxCenter               Extract the mean value of the covariates
coxFormula              Extract the formula from a Cox model
coxLP                   Compute the linear predictor of a Cox model
coxModelFrame           Extract the design matrix used to train a Cox
                        model
coxN                    Extract the number of observations from a Cox
                        model
coxSpecial              Special characters in Cox model
coxStrata               Define the strata for a new dataset
coxStrataLevel          Returns the name of the strata in Cox model
coxVarCov               Extract the variance covariance matrix of the
                        beta from a Cox model
coxVariableName         Extract variable names from a model
discreteRoot            Dichotomic search for monotone function
getSplitMethod          Input for data splitting algorithms
iid.wglm                IID for IPCW Logistic Regressions
iidCox                  Extract iid decomposition from a Cox model
influenceTest           Influence test [Experimental!!]
information.wglm        Information for IPCW Logistic Regressions
ipcw                    Estimation of censoring probabilities
is.iidCox               Check Computation of the Influence Function in
                        a Cox Model
model.matrix.cph        Extract design matrix for cph objects
model.matrix.phreg      Extract design matrix for phreg objects
model.tables.ate        Statistical Inference for the Average Treatment
                        Effect
model.tables.wglm       Statistical Inference for Estimate from IPCW
                        Logistic Regressions
penalizedS3             S3-wrapper for S4 function penalized
plot.riskRegression     Plotting predicted risk
plotAUC                 Plot of time-dependent AUC curves
plotBrier               Plot Brier curve
plotCalibration         Plot Calibration curve
plotEffects             Plotting time-varying effects from a risk
                        regression model.
plotPredictRisk         Plotting predicted risks curves.
plotROC                 Plot ROC curves
plotRisk                plot predicted risks
predict.CauseSpecificCox
                        Predicting Absolute Risk from Cause-Specific
                        Cox Models
predict.FGR             Predict subject specific risks (cumulative
                        incidence) based on Fine-Gray regression model
predict.riskRegression
                        Predict individual risk.
predictCox              Survival probabilities, hazards and cumulative
                        hazards from Cox regression models
predictCoxPL            Deprecated Function for Product Limit
                        Estimation of Survival Probabilities .
predictRisk             Extrating predicting risks from regression
                        models
print.CauseSpecificCox
                        Print of a Cause-Specific Cox regression model
print.FGR               Print of a Fine-Gray regression model
print.GLMnet            Print of a glmnet regression model
print.IPA               Print IPA object
print.Score             Print Score object
print.ate               Print Average Treatment Effects
print.influenceTest     Output of the DIfference Between Two Estimates
print.predictCSC        Print Predictions From a Cause-specific Cox
                        Proportional Hazard Regression
print.predictCox        Print Predictions From a Cox Model
print.riskRegression    Print function for riskRegression models
print.subjectWeights    Print subject weights
print.synth_code        Print synthesized code
reconstructData         Reconstruct the original dataset
riskLevelPlot           Level plots for risk prediction models
riskRegression          Risk Regression Fits a regression model for the
                        risk of an event - allowing for competing
                        risks.
riskRegression.options
                        Global options for 'riskRegression'
rowCenter_cpp           Apply - by row
rowCumSum               Apply cumsum in each row
rowMultiply_cpp         Apply * by row
rowPaste                Collapse Rows of Characters.
rowScale_cpp            Apply / by row
rowSumsCrossprod        Apply crossprod and rowSums
sampleData              Simulate data with binary or time-to-event
                        outcome
saveCoxConfidential     Save confidential Cox objects
saveSynth               Export a 'synth' object.
score.wglm              Score for IPCW Logistic Regressions
selectCox               Backward variable selection in the Cox
                        regression model
selectJump              Evaluate the influence function at selected
                        times
simActiveSurveillance   Simulate data of a hypothetical active
                        surveillance prostate cancer study
simMelanoma             Simulate data alike the Melanoma data
simPBC                  simulating data alike the pbc data
simsynth                Simulating from a synthesized object
splitStrataVar          Reconstruct each of the strata variables
subjectWeights          Estimation of censoring probabilities at
                        subject specific times
subsetIndex             Extract Specific Elements From An Object
summary.FGR             Summary of a Fine-Gray regression model
summary.Score           Summary of prediction performance metrics
summary.ate             Summary Average Treatment Effects
summary.riskRegression
                        Summary of a risk regression model
synthesize              Cooking and synthesizing survival data
terms.phreg             Extract terms for phreg objects
transformCIBP           Compute Confidence Intervals/Bands and P-values
                        After a Transformation
vcov.ate                Variance-Covariance Matrix for the Average
                        Treatment Effect.
vcov.wglm               Variance-covariance for IPCW Logistic
                        Regressions
weights.wglm            Extract IPCW Weights
wglm                    Logistic Regression Using IPCW
