| aphased | Predicting A-phased DNA repeat(s) | 
| gquad | Predicting G quadruplexes | 
| gquadO | Predicting G quadruplexes including overlaps | 
| hdna | Predicting intramolecular triplexes (H-DNA) | 
| hdnaO | Predicting intramolecular triplexes (H-DNA) including overlaps | 
| slipped | Predicting slipped motif(s) | 
| str | Predicting short tandem repeats | 
| tfo | Predicting triplex forming oligonucleotide(s) | 
| zdna | Predicting Z-DNA motif(s) |