| aracne.a | Algorithm for the Reconstruction of Accurate Cellular Networks |
| aracne.m | Algorithm for the Reconstruction of Accurate Cellular Networks |
| clr | Context Likelihood or Relatedness Network |
| knnmi | Parallel Mutual Information Estimation |
| knnmi.all | Parallel Mutual Information Estimation Between All Matrix Rows |
| knnmi.cross | Parallel Mutual Information Estimation Between the Rows of Two Matrices |
| mrnet | Maximum Relevance Minimum Redundancy |