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Contents of README:Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. Jellyfish is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. See the documentation below for more details. |
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Parent Directory - README 11-Mar-2022 06:34 669 jellyfish_k-mer.SlackBuild 11-Mar-2022 06:34 3.4K jellyfish_k-mer.info 11-Mar-2022 06:34 338 slack-desc 11-Mar-2022 06:34 1.1K
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